TYPE (type of variant, possible values are NO_VARIATION, SNP, MNP, INDEL, SYMBOLIC, and MIXED.HOM-VAR (count of homozygous variant genotypes).HOM-REF (count of homozygous reference genotypes).TRANSITION (1 for a bi-allelic transition (SNP), 0 for bi-allelic transversion (SNP), -1 for INDELs and multi-allelics).The tool also supports the following additional fields: CHROM, ID, QUAL) or any annotation name in the INFO field (e.g. The field can be any standard VCF column (e.g. Use the `-F` argument to extract INFO fields each field will occupy a single column in the outputįile. Included in the output by adding the -show-filtered flag. By default, the tool only extracts PASS or. This tool extracts specified fields for each variant in a VCF file to a tab-delimited table, which may be easier ![]() Extract fields from a VCF file to a tab-delimited table CategoryĮxtract fields from a VCF file to a tab-delimited table
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